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How to Set Up Payroll for Your New Business with Missouri Valley Payroll

Writer's picture: Missouri Valley PayrollMissouri Valley Payroll

Starting a new business is an exciting adventure filled with endless possibilities. However, managing payroll can feel overwhelming if you are not familiar with the essential steps involved. Getting payroll right is crucial for ensuring your employees are paid accurately and on time while keeping your business compliant with federal and state laws. This guide walks you through the foundational steps to effectively set up payroll for your new business.


Understanding Payroll Basics


Before we dive into the specifics, let’s clarify what payroll encompasses. Payroll is the process of managing employee compensation, which includes salaries, wages, bonuses, and deductions. It also involves calculating and withholding taxes, tracking hours worked, and ensuring adherence to labor laws.


When you understand payroll basics, you’ll navigate its implications for your business and employees more effectively. Familiarize yourself with terms like gross pay (the total amount earned before deductions) and net pay (the amount received by employees after deductions) to make informed decisions.


Step 1: Determine Your Business Structure


The initial step in setting up payroll is to determine your business structure. The choice you make impacts how you handle payroll and tax obligations. Common business structures include:


  • Sole Proprietorship: Easy to set up, but the owner is personally liable for debts.

  • Partnership: Shared responsibility, which can simplify management but complicates income splitting.

  • Limited Liability Company (LLC): Provides liability protection while offering flexibility in taxation.

  • Corporation: More complex and costly to set up but offers limited liability and potential tax benefits.


For instance, a 2022 report from the U.S. Small Business Administration found that about 70% of new businesses opt for LLC status due to its balance of protection and tax flexibility.


Step 2: Obtain an Employer Identification Number (EIN)


An Employer Identification Number (EIN) is essential for handling payroll and filing taxes. This unique number, assigned by the IRS, is used for tax identification purposes. You can apply for an EIN online via the IRS website, and the process typically takes less than 10 minutes.


If you plan to hire employees, obtaining an EIN is vital. Even sole proprietors benefit from having one, as it simplifies tax reporting and can help build credibility with financial institutions.


Step 3: Choose a Payroll System


Selecting the right payroll system is crucial for efficient management. The options you have can range from simple manual calculations to sophisticated payroll software or outsourcing payroll services. Factors to consider include your business size, budget, and your expertise in payroll management.


  1. Manual Payroll: Best for very small businesses. It requires careful calculations, but can be time-consuming and prone to errors.

  2. Payroll Software: There are numerous software solutions available that can automate calculations, track hours, and manage employee data. For example, software like QuickBooks or Gusto can save users about 40 hours a year on payroll processing.


  3. Outsourcing Payroll: If you wish to focus on growing your business, using a professional service for payroll can relieve you of stress and ensure compliance.


Step 4: Collect Employee Information


Once you have a payroll system in place, gather essential employee information, including:


  • Full name

  • Social Security Number (SSN)

  • Home address

  • W-4 form (for tax withholding)

  • Hours worked (for hourly employees)


Collecting this information is vital to process payroll accurately and comply with various tax and labor laws. A complete employee record can also protect your business during audits.


Step 5: Classify Employees Correctly


Properly classifying your employees is crucial for compliance and tax purposes. Employees typically fall into these categories:


  • Exempt Employees: Usually salaried workers who do not earn overtime pay.

  • Non-Exempt Employees: Generally hourly workers entitled to overtime pay.


Misclassifying employees can lead to costly legal issues and penalties. The Department of Labor estimates that misclassification can cost businesses up to 30% in back pay claims and fines.


Step 6: Calculate Gross Pay and Deductions


After gathering and classifying your employee information, you can calculate gross pay. For hourly employees, multiply their hourly wage by the total hours worked in the pay period. For salaried employees, you'll divide their annual salary by the number of pay periods in the year.


When calculating deductions, include:


  • Federal and state income taxes

  • Social Security and Medicare taxes

  • Retirement contributions (if any)

  • Health insurance premiums (if applicable)


The remaining amount post-deductions is known as net pay, which is the sum employees take home.


Step 7: Pay Employees


The next step involves distributing payroll to your employees. Determine whether to pay them weekly, bi-weekly, or monthly based on business needs. Ensure paychecks or direct deposits are timely; doing so helps build trust and satisfaction among your team.


Research shows that 82% of employees feel positive about their employer when they receive reliable and timely pay.


Employees receiving payment

Step 8: Stay Compliant with Payroll Regulations


Compliance is vital in payroll management. Understand federal, state, and local labor laws to avoid potential legal issues. Regularly update your payroll practices to keep pace with changes in legislation, tax rates, and reporting requirements.


Keeping accurate records of each employee’s earnings, benefits, and taxes withheld will support your payroll calculations and keep you compliant.


Step 9: File Payroll Taxes


As a business owner, you are responsible for filing various payroll taxes, including:


  • Quarterly federal tax returns

  • Annual tax returns

  • State and local payroll tax filings


Missing tax deadlines can incur penalties, so schedule reminders for key dates. For instance, businesses can face fines of up to 15% for late filings.


Step 10: Keep Accurate Payroll Records


Maintaining accurate payroll records is essential for compliance and effective management. Keep records for each employee that include:


  • Wages and hours worked

  • Tax withholdings and contributions

  • Benefits enrollment and deductions

  • Changes in salary or work hours


These records are crucial for resolving disputes and providing documentation during audits.


Final Thoughts


Setting up payroll for your new business may seem challenging, but breaking it into clear steps can make the process manageable. By adhering to this guide and focusing on accuracy and compliance, you can establish a payroll system that ensures your employees are compensated correctly and on time.


Stay informed about changes in payroll regulations and practices to maintain an effective payroll system. Investing time and effort into your payroll setup is essential for fostering a successful business in the long run.


Payroll compliance overview
Understanding payroll regulations is essential for compliance


Navigating payroll properly enhances your business operations and helps create a positive environment for your employees. Thank you for reading this guide, and best of luck with your new venture!

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